Welcome to the open source software research applications portal. If you are new to open source, we recommend that you read about best practices first. Here you will find templates for web applications and lab pages, reproducible environments for on and off of a compute cluster, and software to help with your research. Continue reading below, or go straight to the applications.

The SLURM Job Maker

Generate a web interface from slurm configuration files for your cluster.

Singularity Containers

Reproducible Research Products using Singularity Containers

Brain Imaging Data Structure

Reproducible neuroscience with the Brain Imaging Data Structure

PEFinder: Container Based Classification of Pulmonary Embolism

An example clinical application - classification of Pulmonary Embolism from radiology reports using containers

Container Based Reproducible Analysis for SLURM

This recipe will walk through the steps to turn a Python script into a container, and then run on a SLURM cluster